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GSC MIxS packages for genomes, metagenomes, and marker sequences More...
( w7 @0 ?- }2 I7 s6 @MIGS Cultured Bacterial/Archaeal9 ~: s. f7 G8 t; m1 P/ Z
Use for cultured bacterial or archaeal genomic sequences. Organism must have lineage Bacteria or Archaea., L" h y, Z8 M, [7 I% I
! m% }2 M1 W, z: k- N9 H9 ^MIGS Eukaryotic
d% c: N* h9 q. d. w! @3 J, KUse for eukaryotic genomic sequences. Organism must have lineage Eukaryota.
) ]" Q) }1 Q2 B! I" [9 g
2 o6 g) F0 s4 J$ x+ k5 K" m0 _MIGS Viral U# H2 g# W% j: l
Use for virus genomic sequences. Organism must have lineage Viruses.
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MIMAG Metagenome-assembled Genome
( g7 {9 j3 h6 w R9 }Use for metagenome-assembled genome sequences produced using computational binning tools that group sequences into individual organism genome assemblies starting from metagenomic data sets. Organism cannot contain the term 'metagenome'. Use the MIUVIG package for virus genomes.1 @3 s: k( X+ i9 u$ G- u7 o1 w
% [9 v2 q) S* X/ j7 i3 c. ~$ k
MIMARKS Specimen3 O& [3 l# R: E H
Use for any type of marker gene sequences, eg, 16S, 18S, 23S, 28S rRNA or COI obtained from cultured or voucher-identifiable specimens. Organism cannot contain the term 'metagenome'.1 n& o1 r' ]7 ]8 G* Y6 J
& l' B2 w, X! n8 @3 q5 G1 y z$ BMIMARKS Survey related
1 z6 h+ ?6 S7 S. M% q- @1 I8 ~7 n7 P& mUse for any type of marker gene sequences, eg, 16S, 18S, 23S, 28S rRNA or COI obtained directly from the environment, without culturing or identification of the organisms. Organism must be a metagenome, where lineage starts with unclassified sequences and scientific name ends with 'metagenome'.1 C$ [9 c( u) w/ c2 B. T# ^* U+ d
& e1 k/ H: M6 p2 e, XMIMS Environmental/Metagenome
( p6 [: y1 f+ Z% {+ WUse for environmental and metagenome sequences. Organism must be a metagenome, where lineage starts with unclassified sequences and scientific name ends with 'metagenome'.0 H; A, H3 X3 q6 G/ c, g
( ?4 C) d$ J* T( oMISAG Single Amplified Genome2 J5 d* k; s- O) [
Use for single amplified genome sequences produced by isolating individual cells, amplifying the genome of each cell using whole genome amplification, and then sequencing the amplified DNA. Organism cannot contain the term 'metagenome'.. ^' Y& k; E1 `; [9 b
1 J* Q* A# V; T, PMIUVIG Uncultivated Virus Genome
% n" P1 A: X1 Z) e, Q8 ~Use for uncultivated virus genome identified in metagenome and metatranscriptome datasets. Organism must have lineage Viruses. |
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